Nbi_g26349 (ATL3)


Aliases : ATL3

Description : not classified & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g26349

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00124260 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G15100 RHA2A RING-H2 finger A2A 0.03 OrthoFinder output from all 47 species
AT3G18930 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g29275 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.03G012300.1 BRH1, Ceric.03G012300 not classified & original description: pacid=50572071... 0.04 OrthoFinder output from all 47 species
Dac_g07562 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g10168 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g09730 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g26675 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g28710 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Gb_26582 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os01g11490.1 LOC_Os01g11490 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g14990.1 LOC_Os02g14990 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g05230.1 LOC_Os11g05230 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10428061g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g06540 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g13489 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g18716 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06664 BRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10560 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01265 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Pir_g64599 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c24_7770V3.1 Pp3c24_7770 hypoxia-responsive family protein / zinc finger... 0.02 OrthoFinder output from all 47 species
Sam_g01312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g31319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114190.1.1 Solyc03g114190 RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc08g081370.1.1 BRH1, Solyc08g081370 E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g48427 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000781 chromosome, telomeric region IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 108 150
No external refs found!