AT1G20696 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : high mobility group B3


Gene families : OG_01_0000591 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000591_tree ,
OG_02_0000611 (LandPlants) Phylogenetic Tree(s): OG_02_0000611_tree ,
OG_03_0002258 (SeedPlants) Phylogenetic Tree(s): OG_03_0002258_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G20696
Cluster HCCA: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000663.58 No alias No description available 0.01 Archaeplastida
Cre06.g261450 No alias No description available 0.06 Archaeplastida
GSVIVT01021424001 No alias High mobility group B protein 14 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01032839001 No alias No description available 0.04 Archaeplastida
Gb_07912 No alias High mobility group B protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_23297 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g01100.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c17_7580V3.1 No alias high mobility group B3 0.03 Archaeplastida
Solyc04g008820.3.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.02 Archaeplastida
GSVIVT01021424001 No alias High mobility group B protein 14 OS=Arabidopsis thaliana 0.05 LandPlants
Gb_23297 No alias no hits & (original description: none) 0.03 LandPlants
LOC_Os09g37910.1 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) 0.02 LandPlants
Pp3c25_7380V3.1 No alias high mobility group B1 0.02 LandPlants
Zm00001e010305_P004 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 113.0) 0.02 LandPlants
AT4G35570 HMGB5, NFD5, NFD05, HMGD high mobility group B5 0.03 SeedPlants
LOC_Os09g37910.1 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) 0.02 SeedPlants
Zm00001e010305_P004 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 113.0) 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000785 chromatin TAS Interproscan
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003682 chromatin binding TAS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006007 glucose catabolic process RCA Interproscan
BP GO:0006333 chromatin assembly or disassembly RCA Interproscan
BP GO:0006333 chromatin assembly or disassembly TAS Interproscan
MF GO:0030527 structural constituent of chromatin TAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009071 HMG_box_dom 35 104
No external refs found!