AT4G13710


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G13710
Cluster HCCA cluster: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01014682001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
LOC_Os04g05050 Os04g0137201 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
MA_10426822g0020 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Smo407495 PACid_15419124 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc02g093580.3.1 Solyc02g093580.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc03g071570.3.1 Solyc03g071570.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc03g113150.3.1 Solyc03g113150.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc09g061890.3.1 Solyc09g061890.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Arabidopsis.org
MF GO:0016829 lyase activity ISS Arabidopsis.org
MF GO:0030570 pectate lyase activity ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 208 385
No external refs found!