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  5. Nbi_g26186

Nbi_g26186


Description : chromatin remodeling factor *(SHPRH) & original description: none


Gene families : OG0003429 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g26186
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
Adi_g012978 No alias chromatin remodeling factor *(SHPRH) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19536 No alias chromatin remodeling factor *(SHPRH) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14079.t1 Aspi01Gene14079 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G027300.1 Ceric.23G027300 not classified & original description: pacid=50609839... 0.03 OrthoFinder output from all 47 species
Dac_g07062 No alias chromatin remodeling factor *(SHPRH) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37215 No alias chromatin remodeling factor *(SHPRH) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_37830 No alias chromatin remodeling factor (SHPRH) 0.04 OrthoFinder output from all 47 species
Len_g22984 No alias chromatin remodeling factor *(SHPRH) & original description: none 0.05 OrthoFinder output from all 47 species
MA_10429306g0010 No alias chromatin remodeling factor (SHPRH) 0.09 OrthoFinder output from all 47 species
MA_7426494g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g25986 No alias chromatin remodeling factor *(SHPRH) & original description: none 0.02 OrthoFinder output from all 47 species
Smo438275 No alias Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Solyc03g095680.2.1 Solyc03g095680 chromatin remodeling factor (SHPRH) 0.04 OrthoFinder output from all 47 species
Spa_g17177 No alias chromatin remodeling factor *(SHPRH) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035860_P002 Zm00001e035860 chromatin remodeling factor (SHPRH) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 338 850
IPR001650 Helicase_C 1540 1644
IPR018957 Znf_C3HC4_RING-type 1435 1484
No external refs found!