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  5. Nbi_g25972

Nbi_g25972


Description : not classified & original description: none


Gene families : OG0003000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g25972
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Ala_g37832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G023800.1 RAB28, ATRAB28,... not classified & original description: pacid=50600510... 0.03 OrthoFinder output from all 47 species
Dde_g09016 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g47990 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01017985001 No alias Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum 0.02 OrthoFinder output from all 47 species
GSVIVT01021881001 No alias Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum 0.03 OrthoFinder output from all 47 species
Len_g28025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40603 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_49897g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g18240.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g06630.1 No alias Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Ore_g14470 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41870 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43455 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g09444 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g55933 RAB28, ATRAB28 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g56546 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo84789 No alias Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc09g065360.4.1 Solyc09g065360 Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g082100.3.1 Solyc09g082100 Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g082110.4.1 Solyc09g082110 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.02 OrthoFinder output from all 47 species
Spa_g26688 RAB28, ATRAB28 not classified & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
InterPro domains Description Start Stop
IPR007011 LEA_SMP_dom 267 324
IPR007011 LEA_SMP_dom 81 135
IPR007011 LEA_SMP_dom 10 63
IPR007011 LEA_SMP_dom 331 389
IPR007011 LEA_SMP_dom 152 206
No external refs found!