AT1G20370


Description : Pseudouridine synthase family protein


Gene families : OG_01_0004432 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004432_tree ,
OG_02_0004946 (LandPlants) Phylogenetic Tree(s): OG_02_0004946_tree ,
OG_03_0007540 (SeedPlants) Phylogenetic Tree(s): OG_03_0007540_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G20370
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008716001 No alias RNA processing.RNA... 0.05 Archaeplastida
Gb_06538 No alias tRNA pseudouridine synthase (TruA) 0.03 Archaeplastida
LOC_Os02g44810.1 No alias tRNA pseudouridine synthase (TruA) 0.04 Archaeplastida
Mp7g06450.1 No alias tRNA pseudouridine synthase (TruA) 0.08 Archaeplastida
Zm00001e015383_P004 No alias tRNA pseudouridine synthase (TruA) 0.04 Archaeplastida
GSVIVT01008716001 No alias RNA processing.RNA... 0.05 LandPlants
Gb_06538 No alias tRNA pseudouridine synthase (TruA) 0.02 LandPlants
LOC_Os02g44810.1 No alias tRNA pseudouridine synthase (TruA) 0.04 LandPlants
Mp7g06450.1 No alias tRNA pseudouridine synthase (TruA) 0.08 LandPlants
Pp3c5_14220V3.1 No alias Pseudouridine synthase family protein 0.02 LandPlants
Zm00001e015383_P004 No alias tRNA pseudouridine synthase (TruA) 0.04 LandPlants
GSVIVT01008716001 No alias RNA processing.RNA... 0.04 SeedPlants
Gb_06538 No alias tRNA pseudouridine synthase (TruA) 0.02 SeedPlants
LOC_Os02g44810.1 No alias tRNA pseudouridine synthase (TruA) 0.04 SeedPlants
Zm00001e015383_P004 No alias tRNA pseudouridine synthase (TruA) 0.04 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006333 chromatin assembly or disassembly RCA Interproscan
MF GO:0009982 pseudouridine synthase activity ISS Interproscan
MF GO:0009982 pseudouridine synthase activity TAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR020097 PsdUridine_synth_TruA_a/b_dom 326 430
No external refs found!