AT4G09800 (RPS18C)


Aliases : RPS18C

Description : S18 ribosomal protein


Gene families : OG_01_0002586 (Gene family) Phylogenetic Tree(s): OG0002586_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G09800
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cre06.g272950 No alias 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.14 Gene family
GSVIVT01017975001 No alias 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.14 Gene family
GSVIVT01034582001 No alias 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.09 Gene family
LOC_Os03g58050 Os03g0794700 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.09 Gene family
Smo267619 PACid_15412728 No description available 0.08 Gene family
Solyc03g078290.3.1 Solyc03g078290.3 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.11 Gene family
Solyc06g073370.3.1 Solyc06g073370.3 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.11 Gene family
Solyc11g005680.2.1 Solyc11g005680.2 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.09 Gene family
Zm00001d013086 GRMZM2G130544 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.16 Gene family
Zm00001d034422 GRMZM2G178341 29.2.1.2.1.18 protein.synthesis.ribosomal... 0.13 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005773 vacuole IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0006412 translation TAS Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
CC GO:0015935 small ribosomal subunit ISS Arabidopsis.org
CC GO:0015935 small ribosomal subunit TAS Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
BP GO:0042254 ribosome biogenesis IBA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!