Nbi_g25715


Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000222 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000222_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g25715

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 39 species
Adi_g047038 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Aev_g02982 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ala_g12035 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 39 species
Aop_g12168 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 39 species
Aspi01Gene06611.t1 Aspi01Gene06611 component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Aspi01Gene42112.t1 Aspi01Gene42112 component *(uL2) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ceric.01G015000.1 Ceric.01G015000 component *(uL2) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ceric.30G024600.1 Ceric.30G024600 component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Cre12.g535851 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 39 species
Dac_g02131 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 39 species
Dcu_g05184 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
GSVIVT01014552001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 39 species
Gb_40541 No alias component RPL8 of LSU proteome component 0.01 OrthoFinder output from all 39 species
MA_17500g0010 EMB2296 60S ribosomal protein L8 OS=Solanum lycopersicum... 0.01 OrthoFinder output from all 39 species
Mp7g01860.1 EMB2296 component RPL8 of LSU proteome component 0.02 OrthoFinder output from all 39 species
Mp7g08730.1 EMB2296 component RPL8 of LSU proteome component 0.02 OrthoFinder output from all 39 species
Msp_g07633 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 39 species
Pir_g12813 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Pp3c13_21760V3.1 EMB2296, Pp3c13_21760 Ribosomal protein L2 family 0.03 OrthoFinder output from all 39 species
Pp3c13_23630V3.1 EMB2296, Pp3c13_23630 Ribosomal protein L2 family 0.04 OrthoFinder output from all 39 species
Ppi_g60464 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 39 species
Sam_g13696 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Smo170971 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 39 species
Spa_g30832 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 39 species
Spa_g34378 No alias not classified & original description: none 0.03 OrthoFinder output from all 39 species
Spa_g39107 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 39 species
Spa_g52209 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 39 species
Tin_g00494 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 39 species
Zm00001e002931_P001 EMB2296, Zm00001e002931 component RPL8 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Zm00001e018178_P001 EMB2296, Zm00001e018178 component RPL8 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Zm00001e033350_P001 EMB2296, Zm00001e033350 component RPL8 of LSU proteome component 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 98 225
IPR022666 Rbsml_prot_L2_RNA-bd_dom 14 90
No external refs found!