Nbi_g25715

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g25715

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00109050	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
AT2G18020	EMB2296	Ribosomal protein L2 family	0.11	OrthoFinder output from all 47 species
AT4G36130	No alias	Ribosomal protein L2 family	0.11	OrthoFinder output from all 47 species
Adi_g047038	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g086062	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g113531	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g12035	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g43864	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g12168	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aspi01Gene06611.t1	Aspi01Gene06611	component *(uL2) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene42112.t1	Aspi01Gene42112	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.01G015000.1	Ceric.01G015000	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.30G024600.1	Ceric.30G024600	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020965.22	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Cre12.g535851	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Dac_g02131	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
GSVIVT01014552001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os12g38000.1	LOC_Os12g38000	component RPL8 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Lfl_g08739	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_10431163g0010	No alias	component RPL8 of LSU proteome component	0.06	OrthoFinder output from all 47 species
MA_219740g0010	No alias	component RPL8 of LSU proteome component	0.04	OrthoFinder output from all 47 species
MA_2288695g0010	EMB2296	60S ribosomal protein L8-1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp7g01860.1	EMB2296	component RPL8 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Mp7g08730.1	EMB2296	component RPL8 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Msp_g07633	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ore_g18846	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c12_10200V3.1	EMB2296, Pp3c12_10200	Ribosomal protein L2 family	0.03	OrthoFinder output from all 47 species
Pp3c13_23630V3.1	EMB2296, Pp3c13_23630	Ribosomal protein L2 family	0.06	OrthoFinder output from all 47 species
Pp3c4_12690V3.1	EMB2296, Pp3c4_12690	Ribosomal protein L2 family	0.08	OrthoFinder output from all 47 species
Pp3c4_12720V3.1	EMB2296, Pp3c4_12720	Ribosomal protein L2 family	0.08	OrthoFinder output from all 47 species
Ppi_g33659	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g60464	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g13695	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g13696	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo170971	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Solyc07g063890.2.1	Solyc07g063890	component RPL8 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Solyc12g005330.2.1	Solyc12g005330	component RPL8 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Spa_g30832	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g39107	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g52209	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Tin_g00494	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e002931_P001	EMB2296, Zm00001e002931	component RPL8 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e018178_P001	EMB2296, Zm00001e018178	component RPL8 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e033350_P001	EMB2296, Zm00001e033350	component RPL8 of LSU proteome component	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	98	225
IPR022666	Rbsml_prot_L2_RNA-bd_dom	14	90

External Links

No external refs found!

Nbi_g25715

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation