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  5. Nbi_g25709

Nbi_g25709 (ATPRP40A, PRP40A)


Aliases : ATPRP40A, PRP40A

Description : pre-mRNA-processing protein *(PRP40A/B) & original description: none


Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g25709

Target Alias Description ECC score Gene Family Method Actions
Ehy_g29464 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Spa_g09384 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 206 233
IPR001202 WW_dom 249 274
IPR002713 FF_domain 631 687
IPR002713 FF_domain 422 471
IPR002713 FF_domain 489 539
IPR002713 FF_domain 767 814
IPR002713 FF_domain 560 606
No external refs found!