AT4G01990


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000285 (Gene family) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G01990
Cluster HCCA cluster: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01002065001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
GSVIVT01014363001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
GSVIVT01020533001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.04 Gene family
GSVIVT01024495001 No alias No description available 0.03 Gene family
LOC_Os01g19490 Os01g0301000 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
LOC_Os01g19548 Os01g0301700 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
LOC_Os07g40750 Os07g0598500 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
LOC_Os10g35750 Os10g0501200 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
LOC_Os12g34340 Os12g0527900 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
MA_7558g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
MA_777619g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
Solyc01g079320.3.1 Solyc01g079320.3 27.3.67 RNA.regulation of transcription.putative... 0.06 Gene family
Solyc02g078330.3.1 Solyc02g078330.3 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Solyc02g078350.3.1 Solyc02g078350.3 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
Zm00001d009122 GRMZM2G143777 27.3.67 RNA.regulation of transcription.putative... 0.07 Gene family
Zm00001d013923 GRMZM2G135940 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
BP GO:0009560 embryo sac egg cell differentiation RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 355 375
IPR002885 Pentatricopeptide_repeat 211 240
IPR002885 Pentatricopeptide_repeat 318 342
IPR002885 Pentatricopeptide_repeat 141 169
No external refs found!