AT4G01800 (SECA1, AtcpSecA, AGY1)


Aliases : SECA1, AtcpSecA, AGY1

Description : Albino or Glassy Yellow 1


Gene families : OG_01_0001773 (Gene family) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G01800
Cluster HCCA cluster: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
Cre12.g517900 No alias 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.02 Gene family
GSVIVT01028249001 No alias 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.05 Gene family
LOC_Os01g21820 Os01g0321300 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.05 Gene family
LOC_Os11g08980 Os11g0195100 29.3.3 protein.targeting.chloroplast Encodes a component... 0.05 Gene family
Smo156007 PACid_15405959 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.05 Gene family
Solyc01g080840.3.1 Solyc01g080840.3 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.04 Gene family
Zm00001d004707 GRMZM2G090020,... 29.3.3 protein.targeting.chloroplast Encodes a component... 0.04 Gene family
Zm00001d040686 GRMZM5G880102 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISS Arabidopsis.org
CC GO:0005886 plasma membrane ISM Arabidopsis.org
BP GO:0006605 protein targeting ISS Arabidopsis.org
BP GO:0006886 intracellular protein transport ISS Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009570 chloroplast stroma IDA Arabidopsis.org
BP GO:0009646 response to absence of light IEP Arabidopsis.org
BP GO:0009658 chloroplast organization IMP Arabidopsis.org
CC GO:0009941 chloroplast envelope IDA Arabidopsis.org
BP GO:0010027 thylakoid membrane organization RCA Arabidopsis.org
BP GO:0010090 trichome morphogenesis IMP Arabidopsis.org
BP GO:0010109 regulation of photosynthesis IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011130 SecA_preprotein_X-link_dom 307 413
IPR011115 SecA_DEAD 87 457
IPR011116 SecA_Wing/Scaffold 763 978
No external refs found!