AT4G01010 (ATCNGC13, CNGC13)


Aliases : ATCNGC13, CNGC13

Description : cyclic nucleotide-gated channel 13


Gene families : OG_01_0000081 (Gene family) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G01010
Cluster HCCA cluster: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT2G28260 CNGC15, ATCNGC15 cyclic nucleotide-gated channel 15 0.04 Gene family
AT2G46440 CNGC11, ATCNGC11 cyclic nucleotide-gated channels 0.05 Gene family
AT2G46450 ATCNGC12, CNGC12 cyclic nucleotide-gated channel 12 0.04 Gene family
AT3G17690 CNGC19, ATCNGC19 cyclic nucleotide gated channel 19 0.02 Gene family
AT5G54250 DND2, CNGC4,... cyclic nucleotide-gated cation channel 4 0.02 Gene family
GSVIVT01027087001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.05 Gene family
GSVIVT01028711001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
GSVIVT01029404001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.05 Gene family
GSVIVT01029407001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
LOC_Os02g15580 Os02g0255000 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
LOC_Os06g08850 Os06g0188000 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
LOC_Os06g10580 Os06g0207700 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
LOC_Os09g38580 Os09g0558300 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
MA_10425832g0010 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
MA_10435474g0010 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
MA_10436286g0010 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
MA_10437228g0010 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Smo266514 PACid_15408982 No description available 0.03 Gene family
Solyc03g007260.3.1 Solyc03g007260.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
Solyc03g098210.3.1 Solyc03g098210.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.05 Gene family
Solyc05g050350.2.1 Solyc05g050350.2 34.22 transport.cyclic nucleotide or calcium regulated... 0.08 Gene family
Solyc05g050360.3.1 Solyc05g050360.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.07 Gene family
Solyc05g050380.3.1 Solyc05g050380.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.08 Gene family
Solyc07g005590.3.1 Solyc07g005590.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc07g006510.3.1 Solyc07g006510.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Solyc12g010010.2.1 Solyc12g010010.2 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Zm00001d037035 GRMZM2G129375,... 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity ISS Arabidopsis.org
MF GO:0005516 calmodulin binding ISS Arabidopsis.org
CC GO:0005886 plasma membrane ISM Arabidopsis.org
BP GO:0006612 protein targeting to membrane RCA Arabidopsis.org
BP GO:0009693 ethylene biosynthetic process RCA Arabidopsis.org
BP GO:0009697 salicylic acid biosynthetic process RCA Arabidopsis.org
BP GO:0009863 salicylic acid mediated signaling pathway RCA Arabidopsis.org
BP GO:0010200 response to chitin RCA Arabidopsis.org
BP GO:0010363 regulation of plant-type hypersensitive response RCA Arabidopsis.org
MF GO:0030551 cyclic nucleotide binding ISS Arabidopsis.org
BP GO:0031348 negative regulation of defense response RCA Arabidopsis.org
BP GO:0043069 negative regulation of programmed cell death RCA Arabidopsis.org
BP GO:0045087 innate immune response RCA Arabidopsis.org
BP GO:0050832 defense response to fungus RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 77 402
IPR000595 cNMP-bd_dom 494 584
No external refs found!