AT4G00100 (ATRPS13A, RPS13, PFL2, RPS13A)


Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : ribosomal protein S13A


Gene families : OG_01_0002050 (Gene family) Phylogenetic Tree(s): OG0002050_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G00100
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000489.15 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.1 Gene family
Cre07.g331900 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.54 Gene family
GSVIVT01018537001 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.33 Gene family
GSVIVT01027637001 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.37 Gene family
LOC_Os07g38540 Os07g0572900 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.28 Gene family
LOC_Os08g02400 Os08g0117200 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.25 Gene family
LOC_Os08g02410 Os08g0117300 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.35 Gene family
MA_141232g0010 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.12 Gene family
Smo440805 PACid_15407822 No description available 0.19 Gene family
Solyc01g091220.3.1 Solyc01g091220.3 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.39 Gene family
Solyc03g083530.3.1 Solyc03g083530.3 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.23 Gene family
Solyc05g051000.3.1 Solyc05g051000.3 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.29 Gene family
Solyc10g018250.2.1 Solyc10g018250.2 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.24 Gene family
Solyc11g072260.2.1 Solyc11g072260.2 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.32 Gene family
Zm00001d035094 GRMZM5G852185 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.39 Gene family
Zm00001d049666 GRMZM2G158034 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.11 Gene family
Zm00001d049668 GRMZM2G112050 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.46 Gene family

Type GO Term Name Evidence Source
BP GO:0000911 cytokinesis by cell plate formation IMP Arabidopsis.org
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005783 endoplasmic reticulum IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0006412 translation TAS Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
BP GO:0009664 plant-type cell wall organization RCA Arabidopsis.org
BP GO:0009965 leaf morphogenesis IMP Arabidopsis.org
BP GO:0010090 trichome morphogenesis IMP Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit NAS Arabidopsis.org
BP GO:0042545 cell wall modification RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 74 145
No external refs found!