Nbi_g24909

Description : type-Ia DNA topoisomerase & original description: none

Gene families : OG0003699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003699_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g24909
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
Adi_g021892	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g35237	No alias	type-Ia DNA topoisomerase & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g27398	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g78123	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.1Z115300.1	Ceric.1Z115300	not classified & original description: pacid=50604734...	0.03	OrthoFinder output from all 47 species
Ceric.22G057500.1	Ceric.22G057500	type-Ia DNA topoisomerase & original description:...	0.04	OrthoFinder output from all 47 species
Cre10.g442850	No alias	Cell cycle.organelle machineries.DNA replication.type-Ia...	0.01	OrthoFinder output from all 47 species
LOC_Os06g16980.1	LOC_Os06g16980	type-Ia DNA topoisomerase	0.03	OrthoFinder output from all 47 species
Len_g08848	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g13526	No alias	type-Ia DNA topoisomerase & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g47727	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g42340	No alias	type-Ia DNA topoisomerase & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g12244	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g49243	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g34353	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e036824_P001	Zm00001e036824	type-Ia DNA topoisomerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013498	Topo_IA_Znf	791	826
IPR006171	TOPRIM_domain	177	291
IPR025589	Toprim_C_rpt	919	968
IPR025589	Toprim_C_rpt	860	917
IPR013497	Topo_IA_cen	309	747

External Links

No external refs found!

Nbi_g24909

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation