AT3G61890 (HB-12, ATHB-12, ATHB12)

Aliases : HB-12, ATHB-12, ATHB12

Description : homeobox 12

Gene families : OG_01_0000092 (Gene family) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT3G61890
Cluster	HCCA cluster: Cluster_119

Target	Alias	Description	ECC score	Gene Family Method
AT4G36740	ATHB40, HB40, HB-5	homeobox protein 40	0.03	Gene family
GSVIVT01008065001	No alias	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
GSVIVT01019012001	No alias	No description available	0.03	Gene family
GSVIVT01019655001	No alias	No description available	0.07	Gene family
GSVIVT01027407001	No alias	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.07	Gene family
LOC_Os02g43330	Os02g0649300	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.07	Gene family
LOC_Os03g07450	Os03g0170600	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.03	Gene family
LOC_Os03g08960	Os03g0188900	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
LOC_Os04g45810	Os04g0541700	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.08	Gene family
LOC_Os09g21180	Os09g0379600	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
LOC_Os09g29460	Os09g0470500	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
MA_3688g0010	No alias	No description available	0.02	Gene family
MA_60543g0010	No alias	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.03	Gene family
MA_9241385g0010	No alias	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
Smo81609	PACid_15409700	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
Solyc01g096320.3.1	Solyc01g096320.3	No description available	0.05	Gene family
Solyc02g085630.3.1	Solyc02g085630.3	No description available	0.02	Gene family
Solyc03g082550.3.1	Solyc03g082550.3	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.03	Gene family
Zm00001d002799	GRMZM2G351330	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.08	Gene family
Zm00001d017422	GRMZM2G117164	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.06	Gene family
Zm00001d021268	GRMZM2G041462	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
Zm00001d025964	GRMZM2G396527	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.03	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Arabidopsis.org
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Arabidopsis.org
CC	GO:0005634	nucleus	ISS	Arabidopsis.org
CC	GO:0005634	nucleus	ISM	Arabidopsis.org
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Arabidopsis.org
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	IEP	Arabidopsis.org
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009414	response to water deprivation	IEP	Arabidopsis.org
BP	GO:0009415	response to water	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	IEP	Arabidopsis.org
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IGI	Arabidopsis.org
BP	GO:0009651	response to salt stress	RCA	Arabidopsis.org
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IMP	Arabidopsis.org
BP	GO:0009737	response to abscisic acid	IEP	Arabidopsis.org
BP	GO:0009737	response to abscisic acid	RCA	Arabidopsis.org
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	IDA	Arabidopsis.org
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003106	Leu_zip_homeo	85	127
IPR001356	Homeobox_dom	32	83

External Links

No external refs found!

AT3G61890 (HB-12, ATHB-12, ATHB12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation