AT3G61140 (ATSK31, ATFUS6, SK31,...)


Aliases : ATSK31, ATFUS6, SK31, CSN1, EMB78, FUS6, COP11

Description : 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain


Gene families : OG_01_0007049 (Gene family) Phylogenetic Tree(s): OG0007049_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G61140
Cluster HCCA cluster: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cre05.g234300 No alias 30.11.1 signalling.light.COP9 signalosome Represses... 0.03 Gene family
LOC_Os03g02540 Os03g0116500 30.11.1 signalling.light.COP9 signalosome Represses... 0.02 Gene family
Zm00001d027359 GRMZM2G062210 30.11.1 signalling.light.COP9 signalosome Represses... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0000003 reproduction RCA Arabidopsis.org
BP GO:0000338 protein deneddylation TAS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0006325 chromatin organization RCA Arabidopsis.org
BP GO:0006972 hyperosmotic response IEP Arabidopsis.org
BP GO:0007062 sister chromatid cohesion RCA Arabidopsis.org
BP GO:0007131 reciprocal meiotic recombination RCA Arabidopsis.org
CC GO:0008180 COP9 signalosome IPI Arabidopsis.org
CC GO:0008180 COP9 signalosome TAS Arabidopsis.org
BP GO:0009640 photomorphogenesis RCA Arabidopsis.org
BP GO:0009640 photomorphogenesis TAS Arabidopsis.org
BP GO:0009646 response to absence of light IEP Arabidopsis.org
BP GO:0009651 response to salt stress IEP Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy IMP Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy RCA Arabidopsis.org
BP GO:0009845 seed germination RCA Arabidopsis.org
BP GO:0009880 embryonic pattern specification RCA Arabidopsis.org
BP GO:0009909 regulation of flower development RCA Arabidopsis.org
BP GO:0009933 meristem structural organization RCA Arabidopsis.org
BP GO:0010072 primary shoot apical meristem specification RCA Arabidopsis.org
BP GO:0010090 trichome morphogenesis RCA Arabidopsis.org
BP GO:0010162 seed dormancy process RCA Arabidopsis.org
BP GO:0010182 sugar mediated signaling pathway RCA Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Arabidopsis.org
BP GO:0010431 seed maturation RCA Arabidopsis.org
BP GO:0010564 regulation of cell cycle process RCA Arabidopsis.org
BP GO:0010638 positive regulation of organelle organization RCA Arabidopsis.org
BP GO:0016567 protein ubiquitination RCA Arabidopsis.org
BP GO:0016571 histone methylation RCA Arabidopsis.org
BP GO:0016579 protein deubiquitination RCA Arabidopsis.org
BP GO:0019915 lipid storage RCA Arabidopsis.org
BP GO:0033044 regulation of chromosome organization RCA Arabidopsis.org
BP GO:0045595 regulation of cell differentiation RCA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0048366 leaf development RCA Arabidopsis.org
BP GO:0048825 cotyledon development RCA Arabidopsis.org
BP GO:0050826 response to freezing RCA Arabidopsis.org
BP GO:0051301 cell division RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000717 PCI_dom 294 395
IPR019585 Rpn7/CSN1 104 278
No external refs found!