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  5. Nbi_g24604

Nbi_g24604


Description : not classified & original description: none


Gene families : OG0002638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002638_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g24604
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00100950 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00022p00224500 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00069p00110230 evm_27.TU.AmTr_v1... Protein MEN-8 OS=Silene latifolia 0.05 OrthoFinder output from all 47 species
AT3G07450 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 OrthoFinder output from all 47 species
AT5G07230 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.06 OrthoFinder output from all 47 species
AT5G48490 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT5G52160 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 OrthoFinder output from all 47 species
AT5G55410 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT5G62080 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 OrthoFinder output from all 47 species
Aop_g14820 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Aop_g24129 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ceric.01G093900.1 Ceric.01G093900 not classified & original description: pacid=50592386... 0.05 OrthoFinder output from all 47 species
Ceric.01G098200.1 Ceric.01G098200 not classified & original description: pacid=50591616... 0.06 OrthoFinder output from all 47 species
Ceric.02G080100.1 Ceric.02G080100 not classified & original description: pacid=50585054... 0.05 OrthoFinder output from all 47 species
Ceric.03G048700.1 Ceric.03G048700 not classified & original description: pacid=50573303... 0.05 OrthoFinder output from all 47 species
Ceric.07G064700.1 Ceric.07G064700 not classified & original description: pacid=50625967... 0.08 OrthoFinder output from all 47 species
Dcu_g18333 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g20054 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g31934 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g39418 No alias not classified & original description: none 0.16 OrthoFinder output from all 47 species
GSVIVT01031677001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_27177 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_27456 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g68589.1 LOC_Os01g68589 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g43290.1 LOC_Os08g43290 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os09g35700.1 LOC_Os09g35700 Protein YY1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Len_g41120 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
MA_106330g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_43406g0010 No alias Male-cone protein 1 OS=Pinus radiata (sp|o24493|mc1_pinra : 87.4) 0.02 OrthoFinder output from all 47 species
Msp_g29474 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g44774 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g40103 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g40422 No alias type-III lipid transfer protein *(LTP-III) & original... 0.05 OrthoFinder output from all 47 species
Ore_g40423 No alias type-III lipid transfer protein *(LTP-III) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g08075 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ppi_g17769 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ppi_g18327 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Smo425085 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc01g009590.3.1 Solyc01g009590 Protein 108 OS=Solanum lycopersicum (sp|q43495|108_sollc : 89.4) 0.06 OrthoFinder output from all 47 species
Solyc01g086830.4.1 Solyc01g086830 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc03g026115.1.1 Solyc03g026115 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc06g035820.1.1 Solyc06g035820 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Spa_g40221 No alias not classified & original description: none 0.15 OrthoFinder output from all 47 species
Tin_g27800 No alias not classified & original description: none 0.2 OrthoFinder output from all 47 species
Zm00001e028498_P001 Zm00001e028498 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e028499_P001 Zm00001e028499 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 44 117
No external refs found!