MA_87817g0010


Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus (sp|c6l7u1|lin1_lotja : 403.0)


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0011468 (SeedPlants) Phylogenetic Tree(s): OG_03_0011468_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_87817g0010
Cluster HCCA: Cluster_499

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00198410 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus 0.03 Archaeplastida
GSVIVT01009918001 No alias External stimuli response.biotic... 0.03 Archaeplastida
GSVIVT01026271001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.04 Archaeplastida
LOC_Os01g12930.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 Archaeplastida
Solyc01g066740.3.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.05 Archaeplastida
AMTR_s00041p00198410 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus 0.03 LandPlants
GSVIVT01026271001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 995 1025
IPR003613 Ubox_domain 286 356
No external refs found!