MA_87817g0010

Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus (sp|c6l7u1|lin1_lotja : 403.0)

Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0011468 (SeedPlants) Phylogenetic Tree(s): OG_03_0011468_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_87817g0010
Cluster	HCCA: Cluster_499

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00041p00198410	evm_27.TU.AmTr_v1...	Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus	0.03	Archaeplastida
GSVIVT01009918001	No alias	External stimuli response.biotic...	0.03	Archaeplastida
GSVIVT01026271001	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus	0.04	Archaeplastida
LOC_Os01g12930.1	No alias	ubiquitin E3 ligase (CERBERUS/LIN)	0.02	Archaeplastida
Solyc01g066740.3.1	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.05	Archaeplastida
AMTR_s00041p00198410	evm_27.TU.AmTr_v1...	Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus	0.03	LandPlants
GSVIVT01026271001	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus	0.03	LandPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	995	1025
IPR003613	Ubox_domain	286	356

External Links

No external refs found!