AT3G57430 (OTP84)

Aliases : OTP84

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT3G57430
Cluster	HCCA cluster: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01000086001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
GSVIVT01000244001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
GSVIVT01008173001	No alias	No description available	0.05	Gene family
GSVIVT01009407001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.08	Gene family
GSVIVT01009789001	No alias	No description available	0.04	Gene family
GSVIVT01011333001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
GSVIVT01012159001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
GSVIVT01012461001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
GSVIVT01015466001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.06	Gene family
GSVIVT01017365001	No alias	No description available	0.08	Gene family
GSVIVT01020758001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
GSVIVT01021756001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.1	Gene family
GSVIVT01023971001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.09	Gene family
GSVIVT01025569001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
GSVIVT01029382001	No alias	35.1.27 not assigned.no ontology.tetratricopeptide...	0.04	Gene family
GSVIVT01032721001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.05	Gene family
GSVIVT01033190001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
GSVIVT01033389001	No alias	No description available	0.07	Gene family
GSVIVT01036511001	No alias	No description available	0.05	Gene family
GSVIVT01037562001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
LOC_Os01g10800	Os01g0205200	No description available	0.02	Gene family
LOC_Os01g62910	Os01g0848300	No description available	0.06	Gene family
LOC_Os03g04390	Os03g0136700	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.06	Gene family
LOC_Os04g39410	Os04g0469400	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.07	Gene family
LOC_Os05g50950	Os05g0586900	No description available	0.07	Gene family
LOC_Os06g30940	Os06g0506100	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
MA_100287g0010	No alias	No description available	0.06	Gene family
MA_100519g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_10157572g0010	No alias	No description available	0.02	Gene family
MA_10427342g0010	No alias	No description available	0.02	Gene family
MA_105629g0010	No alias	35.1.27 not assigned.no ontology.tetratricopeptide...	0.02	Gene family
MA_109221g0020	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_11074g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_116829g0010	No alias	No description available	0.04	Gene family
MA_122899g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.05	Gene family
MA_123466g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.05	Gene family
MA_193080g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
MA_20622g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.06	Gene family
MA_210823g0010	No alias	No description available	0.02	Gene family
MA_230261g0010	No alias	No description available	0.02	Gene family
MA_38266g0010	No alias	No description available	0.04	Gene family
MA_43615g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.05	Gene family
MA_4438g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.05	Gene family
MA_445076g0010	No alias	No description available	0.02	Gene family
MA_519985g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_653417g0010	No alias	No description available	0.04	Gene family
MA_73895g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_81514g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_8210920g0010	No alias	No description available	0.04	Gene family
MA_86628g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_94165g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_953793g0020	No alias	No description available	0.03	Gene family
MA_961981g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Smo47998	PACid_15423210	No description available	0.03	Gene family
Smo84657	PACid_15418630	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
Smo85415	PACid_15419909	No description available	0.02	Gene family
Smo88474	PACid_15406454	No description available	0.02	Gene family
Smo90123	PACid_15410274	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Smo98955	PACid_15417483	No description available	0.03	Gene family
Solyc01g007850.2.1	Solyc01g007850.2	No description available	0.04	Gene family
Solyc11g066920.1.1	Solyc11g066920.1	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
Solyc12g006575.1.1	Solyc12g006575.1	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
Zm00001d020825	GRMZM5G851929	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.07	Gene family
Zm00001d025695	GRMZM2G481373	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Zm00001d027555	GRMZM2G176523	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.1	Gene family
Zm00001d031535	GRMZM2G076257	No description available	0.08	Gene family
Zm00001d032185	GRMZM2G161368	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.11	Gene family
Zm00001d035922	GRMZM2G102938,...	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
Zm00001d039193	GRMZM2G440349	No description available	0.04	Gene family
Zm00001d039873	GRMZM2G380195	No description available	0.06	Gene family

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Arabidopsis.org
CC	GO:0009507	chloroplast	ISM	Arabidopsis.org
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IMP	Arabidopsis.org
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	472	499
IPR002885	Pentatricopeptide_repeat	372	397
IPR002885	Pentatricopeptide_repeat	137	162
IPR002885	Pentatricopeptide_repeat	723	752
IPR002885	Pentatricopeptide_repeat	657	682
IPR002885	Pentatricopeptide_repeat	444	470
IPR002885	Pentatricopeptide_repeat	266	312
IPR002885	Pentatricopeptide_repeat	581	628
IPR002885	Pentatricopeptide_repeat	163	210
IPR032867	DYW_dom	756	880

External Links

No external refs found!

AT3G57430 (OTP84)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation