AT3G55460 (SCL30, At-SCL30)


Aliases : SCL30, At-SCL30

Description : SC35-like splicing factor 30


Gene families : OG_01_0000558 (Gene family) Phylogenetic Tree(s): OG0000558_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G55460
Cluster HCCA cluster: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.16 No alias 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.03 Gene family
Cre13.g586916 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.03 Gene family
GSVIVT01016562001 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.04 Gene family
GSVIVT01022010001 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.03 Gene family
GSVIVT01025432001 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.04 Gene family
LOC_Os02g15310 Os02g0252100 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.05 Gene family
LOC_Os03g24890 Os03g0363800 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.02 Gene family
LOC_Os03g25770 Os03g0374575 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.03 Gene family
LOC_Os07g43950 Os07g0633200 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.02 Gene family
Zm00001d047401 GRMZM2G426229 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.04 Gene family
Zm00001d048609 GRMZM2G145725 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Arabidopsis.org
BP GO:0000398 mRNA splicing, via spliceosome TAS Arabidopsis.org
MF GO:0003723 RNA binding ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006979 response to oxidative stress IDA Arabidopsis.org
BP GO:0008380 RNA splicing NAS Arabidopsis.org
CC GO:0016607 nuclear speck IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 49 118
No external refs found!