AT3G55280 (RPL23AB)


Aliases : RPL23AB

Description : ribosomal protein L23AB


Gene families : OG_01_0001231 (Gene family) Phylogenetic Tree(s): OG0001231_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G55280
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000037.39 No alias 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.26 Gene family
Cre06.g282500 No alias 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.29 Gene family
GSVIVT01025606001 No alias 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.16 Gene family
LOC_Os01g24690 Os01g0348700 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.06 Gene family
LOC_Os04g42270 Os04g0501000 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.17 Gene family
MA_10430928g0010 No alias 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.13 Gene family
MA_10436962g0020 No alias 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.15 Gene family
Smo271663 PACid_15402421 No description available 0.17 Gene family
Solyc09g005720.3.1 Solyc09g005720.3 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.2 Gene family
Solyc10g084615.1.1 Solyc10g084615.1 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.1 Gene family
Solyc10g086330.2.1 Solyc10g086330.2 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.14 Gene family
Zm00001d003127 GRMZM2G083253 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.26 Gene family
Zm00001d024655 GRMZM2G172153,... 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.03 Gene family
Zm00001d025784 GRMZM2G124411 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.18 Gene family
Zm00001d037489 GRMZM2G166659 29.2.1.2.2.523 protein.synthesis.ribosomal... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005622 intracellular ISS Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0006979 response to oxidative stress IEP Arabidopsis.org
BP GO:0009409 response to cold IEP Arabidopsis.org
BP GO:0009644 response to high light intensity IEP Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022625 cytosolic large ribosomal subunit IDA Arabidopsis.org
CC GO:0022625 cytosolic large ribosomal subunit ISS Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
BP GO:0042254 ribosome biogenesis ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 15 63
IPR013025 Ribosomal_L25/23 74 136
No external refs found!