AT3G54630


Description : CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink).


Gene families : OG_01_0001251 (Gene family) Phylogenetic Tree(s): OG0001251_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G54630
Cluster HCCA cluster: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021621.13 No alias 31.3 cell.cycle 0.06 Gene family
Cre02.g098300 No alias 31.3 cell.cycle 0.04 Gene family
GSVIVT01013912001 No alias 31.3 cell.cycle 0.02 Gene family
GSVIVT01023023001 No alias 31.3 cell.cycle 0.02 Gene family
LOC_Os08g36490 Os08g0468300,... 31.3 cell.cycle 0.02 Gene family
MA_10432519g0010 No alias 31.3 cell.cycle 0.04 Gene family
MA_180359g0010 No alias 31.3 cell.cycle 0.06 Gene family
Zm00001d032029 GRMZM2G303157 31.3 cell.cycle 0.1 Gene family

Type GO Term Name Evidence Source
BP GO:0000911 cytokinesis by cell plate formation RCA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006260 DNA replication RCA Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0007129 synapsis RCA Arabidopsis.org
BP GO:0007131 reciprocal meiotic recombination RCA Arabidopsis.org
BP GO:0008283 cell proliferation RCA Arabidopsis.org
BP GO:0010564 regulation of cell cycle process RCA Arabidopsis.org
BP GO:0048451 petal formation RCA Arabidopsis.org
BP GO:0048453 sepal formation RCA Arabidopsis.org
BP GO:0051567 histone H3-K9 methylation RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005550 Kinetochore_Ndc80 28 169
No external refs found!