AT3G54560 (HTA11)

Aliases : HTA11

Description : histone H2A 11

Gene families : OG_01_0001029 (Gene family) Phylogenetic Tree(s): OG0001029_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G54560
Cluster HCCA cluster: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AT2G38810 HTA8 histone H2A 8 0.03 Gene family
Cpa|evm.model.tig00021108.27 No alias DNA.synthesis/chromatin... 0.02 Gene family
Cre13.g567700 No alias DNA.synthesis/chromatin... 0.04 Gene family
GSVIVT01003139001 No alias DNA.synthesis/chromatin... 0.09 Gene family
LOC_Os03g06670 Os03g0162200 DNA.synthesis/chromatin... 0.16 Gene family
LOC_Os10g28230 Os10g0418000 DNA.synthesis/chromatin... 0.12 Gene family
Solyc06g084090.3.1 Solyc06g084090.3 DNA.synthesis/chromatin... 0.11 Gene family
Zm00001d013300 GRMZM2G050833 DNA.synthesis/chromatin... 0.02 Gene family
Zm00001d027760 GRMZM2G056231 DNA.synthesis/chromatin... 0.16 Gene family
Zm00001d033979 GRMZM2G149775 DNA.synthesis/chromatin... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS
CC GO:0005634 nucleus ISM
BP GO:0006338 chromatin remodeling RCA
BP GO:0009908 flower development IGI
BP GO:0009909 regulation of flower development RCA
BP GO:0010468 regulation of gene expression IGI
BP GO:0016048 detection of temperature stimulus IGI
BP GO:0042742 defense response to bacterium IGI
BP GO:0042742 defense response to bacterium RCA
BP GO:0044030 regulation of DNA methylation IGI
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 105
IPR032454 Histone_H2A_C 106 135
No external refs found!