AT3G54230 (SUA)


Aliases : SUA

Description : suppressor of abi3-5


Gene families : OG_01_0004209 (Gene family) Phylogenetic Tree(s): OG0004209_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G54230
Cluster HCCA cluster: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013204001 No alias 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.11 Gene family
LOC_Os02g07070 Os02g0167500 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.08 Gene family
MA_188532g0010 No alias 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.06 Gene family
Smo402018 PACid_15423429 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.03 Gene family
Smo407112 PACid_15416541 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.03 Gene family
Solyc08g077310.3.1 Solyc08g077310.3 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.08 Gene family
Zm00001d011742 GRMZM2G151614 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.05 Gene family

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IMP Arabidopsis.org
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Arabidopsis.org
MF GO:0003676 nucleic acid binding ISS Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006346 methylation-dependent chromatin silencing RCA Arabidopsis.org
BP GO:0009616 virus induced gene silencing RCA Arabidopsis.org
BP GO:0010050 vegetative phase change RCA Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Arabidopsis.org
BP GO:0016246 RNA interference RCA Arabidopsis.org
BP GO:0031048 chromatin silencing by small RNA RCA Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Arabidopsis.org
BP GO:0051567 histone H3-K9 methylation RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000467 G_patch_dom 929 970
IPR000504 RRM_dom 274 344
IPR000504 RRM_dom 434 499
No external refs found!