AT3G53920 (SIGC, SIG3)


Aliases : SIGC, SIG3

Description : RNApolymerase sigma-subunit C


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G53920
Cluster HCCA cluster: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g14450 Os08g0242800,... No description available 0.04 Gene family
Smo117159 PACid_15403291 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Solyc01g081490.3.1 Solyc01g081490.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc01g087690.2.1 Solyc01g087690.2 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Solyc08g065970.3.1 Solyc08g065970.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.05 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.03 Gene family
Zm00001d012810 GRMZM2G144196 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IMP Arabidopsis.org
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISS Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation IDA Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation TAS Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
MF GO:0016987 sigma factor activity ISS Arabidopsis.org
BP GO:0019685 photosynthesis, dark reaction NAS Arabidopsis.org
BP GO:0071482 cellular response to light stimulus IEP Arabidopsis.org
BP GO:2001141 regulation of RNA biosynthetic process IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 416 492
IPR007627 RNA_pol_sigma70_r2 336 405
IPR007630 RNA_pol_sigma70_r4 505 558
No external refs found!