AT3G53870


Description : Ribosomal protein S3 family protein


Gene families : OG_01_0001443 (Gene family) Phylogenetic Tree(s): OG0001443_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G53870
Cluster HCCA cluster: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021462.41 No alias 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.26 Gene family
Cre02.g102250 No alias 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.26 Gene family
GSVIVT01015110001 No alias 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.18 Gene family
GSVIVT01016775001 No alias 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.25 Gene family
GSVIVT01035451001 No alias 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.14 Gene family
LOC_Os03g38000 Os03g0577000 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.27 Gene family
MA_10436283g0010 No alias 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.05 Gene family
MA_120861g0010 No alias 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.06 Gene family
Smo270414 PACid_15420223 No description available 0.11 Gene family
Smo270666 PACid_15421786 No description available 0.11 Gene family
Smo438700 PACid_15423262 No description available 0.08 Gene family
Solyc07g041310.3.1 Solyc07g041310.3 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.22 Gene family
Solyc08g061850.3.1 Solyc08g061850.3 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.04 Gene family
Solyc08g061960.3.1 Solyc08g061960.3 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.28 Gene family
Zm00001d024511 GRMZM2G099352 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.29 Gene family
Zm00001d049500 GRMZM2G074300 29.2.1.2.1.3 protein.synthesis.ribosomal... 0.3 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
BP GO:0009651 response to salt stress IEP Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 20 93
IPR001351 Ribosomal_S3_C 106 188
No external refs found!