AT3G49910


Description : Translation protein SH3-like family protein


Gene families : OG_01_0001460 (Gene family) Phylogenetic Tree(s): OG0001460_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G49910
Cluster HCCA cluster: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.60 No alias 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.22 Gene family
Cre01.g040000 No alias 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.36 Gene family
GSVIVT01000114001 No alias 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.05 Gene family
GSVIVT01030972001 No alias 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.08 Gene family
LOC_Os01g04730 Os01g0140500 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.22 Gene family
LOC_Os11g05370 Os11g0151300 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.04 Gene family
LOC_Os12g05430 Os12g0150100 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.31 Gene family
MA_13141g0010 No alias 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.1 Gene family
MA_162587g0010 No alias 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.01 Gene family
Smo227399 PACid_15404041 No description available 0.29 Gene family
Solyc02g064670.1.1 Solyc02g064670.1 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.11 Gene family
Solyc02g092430.1.1 Solyc02g092430.1 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.2 Gene family
Solyc03g044000.1.1 Solyc03g044000.1 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.36 Gene family
Zm00001d008594 GRMZM2G041238 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.12 Gene family
Zm00001d039908 GRMZM2G327564 29.2.1.2.2.26 protein.synthesis.ribosomal... 0.16 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005774 vacuolar membrane IDA Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0009409 response to cold IEP Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0015934 large ribosomal subunit ISS Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022625 cytosolic large ribosomal subunit IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005824 KOW 51 82
IPR005756 Ribosomal_L26/L24P_euk/arc 8 121
No external refs found!