AT3G48930 (EMB1080)


Aliases : EMB1080

Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG_01_0002752 (Gene family) Phylogenetic Tree(s): OG0002752_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G48930
Cluster HCCA cluster: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000551.22 No alias 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.29 Gene family
Cre12.g514500 No alias 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.43 Gene family
GSVIVT01012877001 No alias 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.3 Gene family
GSVIVT01035927001 No alias 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.4 Gene family
LOC_Os04g52361 Os04g0613600 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.05 Gene family
LOC_Os08g10608 Os08g0207000 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.19 Gene family
MA_19350g0010 No alias 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.16 Gene family
Smo268639 PACid_15415730 No description available 0.28 Gene family
Solyc06g073790.3.1 Solyc06g073790.3 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.08 Gene family
Solyc12g042080.2.1 Solyc12g042080.2 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.33 Gene family
Zm00001d002339 GRMZM2G044800 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.29 Gene family
Zm00001d003118 No alias 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.02 Gene family
Zm00001d026286 GRMZM2G019325 29.2.1.2.1.11 protein.synthesis.ribosomal... 0.27 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy NAS Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032440 Ribosomal_S11_N 4 72
IPR000266 Ribosomal_S17/S11 74 142
No external refs found!