AT3G48210


Description : CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).


Gene families : OG_01_0004738 (Gene family) Phylogenetic Tree(s): OG0004738_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G48210
Cluster HCCA cluster: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020684.34 No alias No description available 0.04 Gene family
Cre16.g658600 No alias No description available 0.02 Gene family
GSVIVT01007687001 No alias 35.2 not assigned.unknown 0.08 Gene family
LOC_Os01g74170 Os01g0973200 35.2 not assigned.unknown 0.08 Gene family
Solyc03g112550.3.1 Solyc03g112550.3 35.2 not assigned.unknown 0.02 Gene family
Zm00001d011781 GRMZM2G168386 35.2 not assigned.unknown 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination RCA Arabidopsis.org
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006302 double-strand break repair RCA Arabidopsis.org
BP GO:0006310 DNA recombination RCA Arabidopsis.org
BP GO:0006312 mitotic recombination RCA Arabidopsis.org
BP GO:0007059 chromosome segregation RCA Arabidopsis.org
BP GO:0007062 sister chromatid cohesion RCA Arabidopsis.org
BP GO:0007129 synapsis RCA Arabidopsis.org
BP GO:0007131 reciprocal meiotic recombination RCA Arabidopsis.org
BP GO:0007140 male meiotic nuclear division RCA Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
BP GO:0009560 embryo sac egg cell differentiation RCA Arabidopsis.org
BP GO:0010332 response to gamma radiation RCA Arabidopsis.org
BP GO:0016444 somatic cell DNA recombination RCA Arabidopsis.org
BP GO:0032204 regulation of telomere maintenance RCA Arabidopsis.org
BP GO:0033044 regulation of chromosome organization RCA Arabidopsis.org
BP GO:0042138 meiotic DNA double-strand break formation RCA Arabidopsis.org
BP GO:0043247 telomere maintenance in response to DNA damage RCA Arabidopsis.org
BP GO:0045132 meiotic chromosome segregation RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013255 Spc25 168 235
No external refs found!