1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g22656

Nbi_g22656 (PDR6, ATPDR6)


Aliases : PDR6, ATPDR6

Description : subfamily ABCG transporter & original description: none


Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g22656
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017336001 PDR6, ATPDR6 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Mp2g21800.1 PEN3, ABCG36,... subfamily ABCG transporter 0.01 OrthoFinder output from all 47 species
Pir_g38837 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57903 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g50121 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g101070.3.1 PIS1, ABCG37,... subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Solyc09g091670.3.1 ABCG40, PDR12,... subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Zm00001e024257_P001 PDR11, ATPDR11,... subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0140359 ABC-type transporter activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 1181 1393
IPR013525 ABC_2_trans 505 717
IPR003439 ABC_transporter-like_ATP-bd 884 1036
IPR003439 ABC_transporter-like_ATP-bd 169 351
IPR043926 ABCG_dom 384 458
IPR013581 PDR_assoc 722 786
IPR029481 ABC_trans_N 96 146
No external refs found!