AT3G28730 (ATHMG, HMG, SSRP1, NFD)


Aliases : ATHMG, HMG, SSRP1, NFD

Description : high mobility group


Gene families : OG_01_0001457 (Gene family) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G28730
Cluster HCCA cluster: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000488.11 No alias No description available 0.01 Gene family
Cre01.g029450 No alias 27.3.62 RNA.regulation of... 0.02 Gene family
Solyc02g087710.3.1 Solyc02g087710.3 No description available 0.02 Gene family
Zm00001d008847 GRMZM2G032252 No description available 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation RCA Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005719 nuclear euchromatin IDA Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0006342 chromatin silencing RCA Arabidopsis.org
BP GO:0006346 methylation-dependent chromatin silencing RCA Arabidopsis.org
BP GO:0006366 transcription by RNA polymerase II RCA Arabidopsis.org
BP GO:0007267 cell-cell signaling RCA Arabidopsis.org
BP GO:0009616 virus induced gene silencing RCA Arabidopsis.org
BP GO:0009855 determination of bilateral symmetry RCA Arabidopsis.org
BP GO:0009887 animal organ morphogenesis RCA Arabidopsis.org
BP GO:0010014 meristem initiation RCA Arabidopsis.org
BP GO:0010050 vegetative phase change RCA Arabidopsis.org
BP GO:0010051 xylem and phloem pattern formation RCA Arabidopsis.org
BP GO:0010073 meristem maintenance RCA Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem IMP Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Arabidopsis.org
BP GO:0016246 RNA interference RCA Arabidopsis.org
BP GO:0016569 covalent chromatin modification RCA Arabidopsis.org
BP GO:0031047 gene silencing by RNA RCA Arabidopsis.org
CC GO:0035101 FACT complex IDA Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Arabidopsis.org
BP GO:0048439 flower morphogenesis RCA Arabidopsis.org
BP GO:0048519 negative regulation of biological process RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009071 HMG_box_dom 562 630
IPR013719 DUF1747 350 439
IPR024954 SSRP1_dom 106 174
IPR035417 POB3_N 6 96
No external refs found!