AT3G26560


Description : ATP-dependent RNA helicase, putative


Gene families : OG_01_0000259 (Gene family) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G26560
Cluster HCCA cluster: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.2 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.01 Gene family
Cpa|evm.model.tig00000984.27 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
Cpa|evm.model.tig00020531.53 No alias 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.03 Gene family
Cre07.g349100 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.03 Gene family
Cre08.g358563 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.01 Gene family
Cre24.g755347 No alias 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.02 Gene family
GSVIVT01007911001 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.03 Gene family
GSVIVT01029863001 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.07 Gene family
LOC_Os08g24760 Os08g0335000 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
MA_10435486g0010 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
MA_10435486g0020 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
MA_5383g0010 No alias 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.01 Gene family
Smo233605 PACid_15401686 27.1 RNA.processing ATP-dependent RNA helicase, putative... 0.02 Gene family
Smo82212 PACid_15409607 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.03 Gene family
Solyc10g076910.2.1 Solyc10g076910.2 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.04 Gene family
Zm00001d011963 GRMZM2G300375 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
Zm00001d015893 GRMZM2G029258 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.05 Gene family
Zm00001d028923 GRMZM2G385931 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.03 Gene family
Zm00001d049980 GRMZM2G121776 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.06 Gene family

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Arabidopsis.org
BP GO:0000911 cytokinesis by cell plate formation RCA Arabidopsis.org
MF GO:0003723 RNA binding ISS Arabidopsis.org
MF GO:0004004 ATP-dependent RNA helicase activity ISS Arabidopsis.org
MF GO:0005524 ATP binding ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0006486 protein glycosylation RCA Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 521 671
IPR001650 Helicase_C 713 845
IPR007502 Helicase-assoc_dom 907 995
IPR003029 S1_domain 213 281
IPR011709 DUF1605 1053 1128
No external refs found!