AT1G16830


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0011510 (Archaeplastida) Phylogenetic Tree(s): OG_01_0011510_tree ,
OG_02_0011402 (LandPlants) Phylogenetic Tree(s): OG_02_0011402_tree ,
OG_03_0011461 (SeedPlants) Phylogenetic Tree(s): OG_03_0011461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G16830
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002488_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
AMTR_s00031p00119810 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 SeedPlants
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 246 293
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 488 536
IPR002885 Pentatricopeptide_repeat 218 243
IPR002885 Pentatricopeptide_repeat 420 447
No external refs found!