AT3G25060


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G25060
Cluster HCCA cluster: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01015325001 No alias No description available 0.03 Gene family
GSVIVT01016860001 No alias No description available 0.03 Gene family
GSVIVT01024870001 No alias No description available 0.02 Gene family
GSVIVT01026025001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01028819001 No alias No description available 0.03 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.03 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.03 Gene family
MA_10429540g0020 No alias No description available 0.03 Gene family
MA_117650g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_185098g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20599g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_30949g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_3317g0020 No alias No description available 0.04 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_3449g0010 No alias No description available 0.03 Gene family
MA_445076g0010 No alias No description available 0.03 Gene family
MA_483636g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_525914g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_9258g0010 No alias No description available 0.06 Gene family
MA_9360929g0010 No alias No description available 0.03 Gene family
Solyc01g081290.3.1 Solyc01g081290.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g011680.3.1 Solyc02g011680.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g079260.2.1 Solyc02g079260.2 No description available 0.03 Gene family
Solyc02g093380.1.1 Solyc02g093380.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc03g116843.1.1 Solyc03g116843.1 No description available 0.03 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.03 Gene family
Solyc09g059580.2.1 Solyc09g059580.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.03 Gene family
Zm00001d012961 GRMZM2G144071 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.04 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d039449 No alias No description available 0.03 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d043107 GRMZM2G456114 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d049122 GRMZM2G333678 No description available 0.04 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.05 Gene family
Zm00001d052794 GRMZM2G140600 No description available 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 314
IPR002885 Pentatricopeptide_repeat 457 478
IPR002885 Pentatricopeptide_repeat 256 279
IPR002885 Pentatricopeptide_repeat 184 213
IPR002885 Pentatricopeptide_repeat 153 181
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 80 126
No external refs found!