AT3G23890 (TOPII, ATTOPII)


Aliases : TOPII, ATTOPII

Description : topoisomerase II


Gene families : OG_01_0004172 (Gene family) Phylogenetic Tree(s): OG0004172_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G23890
Cluster HCCA cluster: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021432.55 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.06 Gene family
Cpa|evm.model.tig00021433.2 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.05 Gene family
Cre01.g009250 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.07 Gene family
GSVIVT01032138001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.33 Gene family
LOC_Os02g47150 Os02g0699700 28.1 DNA.synthesis/chromatin structure Encodes a... 0.1 Gene family
MA_133272g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.13 Gene family
MA_6634g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.12 Gene family
Smo127267 PACid_15411383 28.1 DNA.synthesis/chromatin structure Encodes a... 0.11 Gene family
Smo98330 PACid_15412854 28.1 DNA.synthesis/chromatin structure Encodes a... 0.1 Gene family
Solyc01g087500.3.1 Solyc01g087500.3 28.1 DNA.synthesis/chromatin structure Encodes a... 0.31 Gene family
Zm00001d017720 GRMZM2G021270 28.1 DNA.synthesis/chromatin structure Encodes a... 0.21 Gene family
Zm00001d051542 GRMZM2G121210 28.1 DNA.synthesis/chromatin structure Encodes a... 0.28 Gene family

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Arabidopsis.org
BP GO:0000712 resolution of meiotic recombination intermediates IBA Arabidopsis.org
CC GO:0000795 synaptonemal complex IBA Arabidopsis.org
BP GO:0000819 sister chromatid segregation IBA Arabidopsis.org
BP GO:0000911 cytokinesis by cell plate formation RCA Arabidopsis.org
MF GO:0003677 DNA binding ISS Arabidopsis.org
MF GO:0003916 DNA topoisomerase activity ISS Arabidopsis.org
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity ISS Arabidopsis.org
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IBA Arabidopsis.org
MF GO:0005524 ATP binding ISS Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006259 DNA metabolic process ISS Arabidopsis.org
BP GO:0006260 DNA replication RCA Arabidopsis.org
BP GO:0006261 DNA-dependent DNA replication IBA Arabidopsis.org
BP GO:0006265 DNA topological change ISS Arabidopsis.org
BP GO:0006265 DNA topological change IBA Arabidopsis.org
BP GO:0006270 DNA replication initiation RCA Arabidopsis.org
BP GO:0006275 regulation of DNA replication RCA Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0006312 mitotic recombination IBA Arabidopsis.org
BP GO:0006342 chromatin silencing RCA Arabidopsis.org
BP GO:0007059 chromosome segregation ISS Arabidopsis.org
MF GO:0008094 DNA-dependent ATPase activity ISS Arabidopsis.org
MF GO:0008094 DNA-dependent ATPase activity IBA Arabidopsis.org
BP GO:0008283 cell proliferation RCA Arabidopsis.org
CC GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) ISS Arabidopsis.org
CC GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) IBA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
BP GO:0009909 regulation of flower development RCA Arabidopsis.org
BP GO:0009957 epidermal cell fate specification RCA Arabidopsis.org
BP GO:0010583 response to cyclopentenone RCA Arabidopsis.org
BP GO:0016458 gene silencing RCA Arabidopsis.org
BP GO:0016572 histone phosphorylation RCA Arabidopsis.org
BP GO:0034968 histone lysine methylation RCA Arabidopsis.org
BP GO:0044774 mitotic DNA integrity checkpoint IBA Arabidopsis.org
BP GO:0051225 spindle assembly RCA Arabidopsis.org
BP GO:0051567 histone H3-K9 methylation RCA Arabidopsis.org
BP GO:0051726 regulation of cell cycle RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002205 Topo_IIA_A/C 702 1163
IPR003594 HATPase_C 78 225
IPR006171 TOPRIM_domain 457 555
IPR013506 Topo_IIA_bsu_dom2 269 427
IPR031660 TOPRIM_C 571 699
No external refs found!