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  5. Nbi_g22008

Nbi_g22008


Description : not classified & original description: none


Gene families : OG0009011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009011_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g22008
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272590 evm_27.TU.AmTr_v1... Ribosomal protein S3, mitochondrial OS=Petunia hybrida 0.03 OrthoFinder output from all 47 species
ATMG00090 No alias structural constituent of ribosome;protein binding 0.12 OrthoFinder output from all 47 species
Aev_g20617 No alias not classified & original description: none 0.22 OrthoFinder output from all 47 species
Ala_g25281 No alias not classified & original description: none 0.18 OrthoFinder output from all 47 species
Als_g05492 No alias not classified & original description: none 0.28 OrthoFinder output from all 47 species
Aob_g23054 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Aob_g29749 No alias not classified & original description: none 0.16 OrthoFinder output from all 47 species
Aop_g18051 No alias not classified & original description: none 0.18 OrthoFinder output from all 47 species
Cba_g33316 No alias not classified & original description: none 0.26 OrthoFinder output from all 47 species
Ceric.23G029400.1 Ceric.23G029400 not classified & original description: pacid=50610062... 0.22 OrthoFinder output from all 47 species
Cre11.g467702 No alias No description available 0.03 OrthoFinder output from all 47 species
Dde_g51885 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Gb_13807 No alias Ribosomal protein S3, mitochondrial OS=Zea mays... 0.1 OrthoFinder output from all 47 species
LOC_Os12g34054.1 LOC_Os12g34054 component mtRPS3 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
LOC_Os12g34124.1 LOC_Os12g34124 component mtRPS3 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Len_g01174 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g38544 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Mp1g05170.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Pir_g61975 No alias not classified & original description: none 0.21 OrthoFinder output from all 47 species
Sam_g08984 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Solyc05g045826.1.1 Solyc05g045826 Ribosomal protein S3, mitochondrial OS=Petunia hybrida... 0.02 OrthoFinder output from all 47 species
Spa_g02218 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Tin_g11330 No alias not classified & original description: none 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0042773 ATP synthesis coupled electron transport IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 337 417
No external refs found!