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  5. Nbi_g21419

Nbi_g21419


Description : component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT) activation complex & original description: none


Gene families : OG0004396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004396_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g21419

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01036455001 GEX3 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
LOC_Os06g30020.1 LOC_Os06g30020 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.07 OrthoFinder output from all 47 species
Len_g20965 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.04 OrthoFinder output from all 47 species
Lfl_g03270 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
MA_15598g0010 No alias component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
MA_3809g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc03g045060.3.1 Solyc03g045060 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Tin_g11945 No alias component *(ZCCHC8) of Nuclear Exosome TargeTing (NEXT)... 0.03 OrthoFinder output from all 47 species
Zm00001e022737_P001 Zm00001e022737 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 515 562
No external refs found!