AT3G16080


Description : Zinc-binding ribosomal protein family protein


Gene families : OG_01_0001940 (Gene family) Phylogenetic Tree(s): OG0001940_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G16080
Cluster HCCA cluster: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.80 No alias 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.17 Gene family
Cre10.g430400 No alias 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.47 Gene family
GSVIVT01017081001 No alias 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.39 Gene family
GSVIVT01035677001 No alias 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.24 Gene family
LOC_Os02g02130 Os02g0111700 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.18 Gene family
LOC_Os02g56990 Os02g0815000 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.36 Gene family
LOC_Os08g03450 Os08g0128500 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.07 Gene family
MA_129829g0010 No alias 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.05 Gene family
MA_741492g0010 No alias 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.02 Gene family
Solyc03g120780.3.1 Solyc03g120780.3 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.1 Gene family
Solyc06g066660.3.1 Solyc06g066660.3 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.39 Gene family
Solyc08g068180.3.1 Solyc08g068180.3 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.04 Gene family
Zm00001d014969 GRMZM2G168674 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.3 Gene family
Zm00001d029418 GRMZM2G077991 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.31 Gene family
Zm00001d054065 No alias 29.2.1.2.2.37 protein.synthesis.ribosomal... 0.34 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005840 ribosome ISS Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
CC GO:0022625 cytosolic large ribosomal subunit IDA Arabidopsis.org
BP GO:0042254 ribosome biogenesis ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001569 Ribosomal_L37e 3 53
No external refs found!