AT1G15440 (PWP2, ATPWP2)

Aliases : PWP2, ATPWP2

Description : periodic tryptophan protein 2

Gene families : OG_01_0005597 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005597_tree ,
OG_02_0007728 (LandPlants) Phylogenetic Tree(s): OG_02_0007728_tree ,
OG_03_0009679 (SeedPlants) Phylogenetic Tree(s): OG_03_0009679_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G15440
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00059990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
Cpa\|evm.model.tig00000076.89	No alias	Periodic tryptophan protein 2 OS=Arabidopsis thaliana	0.05	Archaeplastida
Cre06.g254150	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	Archaeplastida
GSVIVT01017243001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	Archaeplastida
Gb_23048	No alias	SSU processome assembly factor (UTP1/PWP2)	0.08	Archaeplastida
LOC_Os05g44320.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.2	Archaeplastida
MA_917430g0010	No alias	no hits & (original description: none)	0.08	Archaeplastida
Mp1g17900.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.26	Archaeplastida
Pp3c7_9990V3.1	No alias	periodic tryptophan protein 2	0.17	Archaeplastida
Smo80929	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Solyc03g120080.4.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.17	Archaeplastida
AMTR_s00056p00059990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	LandPlants
GSVIVT01017243001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	LandPlants
Gb_23048	No alias	SSU processome assembly factor (UTP1/PWP2)	0.08	LandPlants
LOC_Os05g44320.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.18	LandPlants
MA_917430g0010	No alias	no hits & (original description: none)	0.07	LandPlants
Mp1g17900.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.26	LandPlants
Pp3c7_9990V3.1	No alias	periodic tryptophan protein 2	0.17	LandPlants
Smo80929	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	LandPlants
Solyc03g120080.4.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.15	LandPlants
AMTR_s00056p00059990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	SeedPlants
GSVIVT01017243001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	SeedPlants
Gb_23048	No alias	SSU processome assembly factor (UTP1/PWP2)	0.08	SeedPlants
LOC_Os05g44320.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.18	SeedPlants
MA_917430g0010	No alias	no hits & (original description: none)	0.07	SeedPlants
Solyc03g120080.4.1	No alias	SSU processome assembly factor (UTP1/PWP2)	0.15	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0000166	nucleotide binding	ISS	Interproscan
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006364	rRNA processing	IMP	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	RCA	Interproscan
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009553	embryo sac development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0017038	protein import	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	509	545
IPR001680	WD40_repeat	555	587
IPR001680	WD40_repeat	421	459
IPR001680	WD40_repeat	386	417
IPR007148	SSU_processome_Utp12	790	895

External Links

No external refs found!

AT1G15440 (PWP2, ATPWP2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation