AT3G13300 (VCS)


Aliases : VCS

Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0000980 (Gene family) Phylogenetic Tree(s): OG0000980_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G13300
Cluster HCCA cluster: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
Cre12.g553100 No alias 33.99 development.unspecified varicose-related (VCR) 0.02 Gene family
GSVIVT01006976001 No alias 33.99 development.unspecified varicose-related (VCR) 0.05 Gene family
GSVIVT01014783001 No alias No description available 0.08 Gene family
LOC_Os06g19660 Os06g0300800 27.1 RNA.processing Encodes VCS (VARICOSE). Involved... 0.09 Gene family
MA_10431534g0010 No alias 33.99 development.unspecified varicose-related (VCR) 0.03 Gene family
MA_10431534g0020 No alias No description available 0.04 Gene family
MA_10431534g0030 No alias 27.1 RNA.processing Encodes VCS (VARICOSE). Involved... 0.06 Gene family
Solyc07g065950.3.1 Solyc07g065950.3 No description available 0.09 Gene family
Zm00001d017883 GRMZM2G029186 No description available 0.06 Gene family
Zm00001d051678 GRMZM2G092085 No description available 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Arabidopsis.org
CC GO:0000932 P-body IDA Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0006402 mRNA catabolic process IMP Arabidopsis.org
BP GO:0009791 post-embryonic development IMP Arabidopsis.org
BP GO:0009965 leaf morphogenesis IMP Arabidopsis.org
BP GO:0010071 root meristem specification IMP Arabidopsis.org
BP GO:0010072 primary shoot apical meristem specification IMP Arabidopsis.org
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IDA Arabidopsis.org
MF GO:0042803 protein homodimerization activity IPI Arabidopsis.org
BP GO:0071365 cellular response to auxin stimulus IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032401 EDC4_WD40 185 498
No external refs found!