AT3G13160


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000772 (Gene family) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G13160
Cluster HCCA cluster: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
Solyc02g062910.2.1 Solyc02g062910.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g085650.3.1 Solyc02g085650.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc03g031460.1.1 Solyc03g031460.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.09 Gene family
Zm00001d012606 GRMZM2G139141 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d017317 GRMZM2G165290 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Arabidopsis.org
BP GO:0009909 regulation of flower development RCA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
BP GO:0034968 histone lysine methylation RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 220
IPR002885 Pentatricopeptide_repeat 112 152
IPR002885 Pentatricopeptide_repeat 246 293
IPR002885 Pentatricopeptide_repeat 319 343
No external refs found!