Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0000772 (Gene family) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G13160
Cluster HCCA cluster: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
Solyc02g062910.2.1 Solyc02g062910.2 35.1.5 not ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g085650.3.1 Solyc02g085650.3 35.1.5 not ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc03g031460.1.1 Solyc03g031460.1 35.1.5 not ontology.pentatricopeptide (PPR)... 0.09 Gene family
Zm00001d012606 GRMZM2G139141 35.1.5 not ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d017317 GRMZM2G165290 35.1.5 not ontology.pentatricopeptide (PPR)... 0.07 Gene family

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA
CC GO:0005739 mitochondrion ISM
BP GO:0008150 biological_process ND
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA
BP GO:0009909 regulation of flower development RCA
CC GO:0016020 membrane IDA
BP GO:0034968 histone lysine methylation RCA
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 220
IPR002885 Pentatricopeptide_repeat 112 152
IPR002885 Pentatricopeptide_repeat 246 293
IPR002885 Pentatricopeptide_repeat 319 343
No external refs found!