AT1G15340 (MBD10)

Aliases : MBD10

Description : methyl-CPG-binding domain 10

Gene families : OG_01_0003057 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003057_tree ,
OG_02_0002066 (LandPlants) Phylogenetic Tree(s): OG_02_0002066_tree ,
OG_03_0002151 (SeedPlants) Phylogenetic Tree(s): OG_03_0002151_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G15340
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
MA_46923g0010	No alias	methylation reader (MBD10-11)	0.04	Archaeplastida
MA_46923g0010	No alias	methylation reader (MBD10-11)	0.04	LandPlants
Zm00001e004995_P005	No alias	methylation reader (MBD10-11)	0.02	LandPlants
GSVIVT01015565001	No alias	Methyl-CpG-binding domain-containing protein 10...	0.02	SeedPlants
MA_46923g0010	No alias	methylation reader (MBD10-11)	0.04	SeedPlants
Solyc11g068910.3.1	No alias	methylation reader (MBD10-11)	0.02	SeedPlants
Zm00001e004995_P005	No alias	methylation reader (MBD10-11)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
MF	GO:0008327	methyl-CpG binding	ISS	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001739	Methyl_CpG_DNA-bd	9	74

External Links

No external refs found!