AT1G15215


Description : BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG_01_0002006 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002006_tree ,
OG_02_0001458 (LandPlants) Phylogenetic Tree(s): OG_02_0001458_tree ,
OG_03_0001429 (SeedPlants) Phylogenetic Tree(s): OG_03_0001429_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G15215
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g17770.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida
Gb_33346 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 LandPlants
Gb_33346 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006306 DNA methylation IMP Interproscan
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IMP Interproscan
BP GO:0031047 gene silencing by RNA IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 105 221
No external refs found!