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  5. Nbi_g20507

Nbi_g20507 (RGA2, GAI)


Aliases : RGA2, GAI

Description : transcription factor *(DELLA) & original description: none


Gene families : OG0001108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g20507

Target Alias Description ECC score Gene Family Method Actions
AT1G66350 RGL1, RGL RGA-like 1 0.03 OrthoFinder output from all 47 species
AT2G01570 RGA, RGA1 GRAS family transcription factor family protein 0.03 OrthoFinder output from all 47 species
Ala_g27684 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene12896.t1 SCR, SGR1,... GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029812 RGL2 GRAS-type transcription factor & original description: CDS=1-2046 0.04 OrthoFinder output from all 47 species
Azfi_s0460.g072066 RGA2, GAI GRAS-type transcription factor & original description: CDS=1-2034 0.03 OrthoFinder output from all 47 species
Cba_g20248 RGA, RGA1 transcription factor *(DELLA) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38769 SCR, SGR1 GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01007532001 RGA2, GAI RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
LOC_Os03g49990.1 RGA2, GAI, LOC_Os03g49990 DELLA-type gibberellin signal transducer. transcription... 0.05 OrthoFinder output from all 47 species
LOC_Os05g49930.1 RGA2, GAI, LOC_Os05g49930 DELLA-type gibberellin signal transducer. transcription... 0.03 OrthoFinder output from all 47 species
Msp_g15492 RGA2, GAI transcription factor *(DELLA) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03910 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
Ore_g29234 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.02 OrthoFinder output from all 47 species
Ore_g32765 RGA, RGA1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g37064 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g02479 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g08839 RGA, RGA1 transcription factor *(DELLA) & original description: none 0.02 OrthoFinder output from all 47 species
Smo122441 RGL2 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
Smo139506 RGA2, GAI RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
Zm00001e005412_P001 RGA, RGA1, Zm00001e005412 DELLA-type gibberellin signal transducer. transcription... 0.03 OrthoFinder output from all 47 species
Zm00001e012213_P001 RGA2, GAI, Zm00001e012213 DELLA-type gibberellin signal transducer. transcription... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 521 839
IPR021914 TF_DELLA_N 134 199
No external refs found!