AT3G09840 (CDC48A, CDC48, ATCDC48)


Aliases : CDC48A, CDC48, ATCDC48

Description : cell division cycle 48


Gene families : OG_01_0000410 (Gene family) Phylogenetic Tree(s): OG0000410_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G09840
Cluster HCCA cluster: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cre06.g269950 No alias 31.2 cell.division ATPase, AAA-type, CDC48 protein 0.01 Gene family
Solyc10g084050.2.1 Solyc10g084050.2 31.2 cell.division ATPase, AAA-type, CDC48 protein 0.02 Gene family
Zm00001d027707 GRMZM2G703490 31.2 cell.division ATPase, AAA-type, CDC48 protein 0.03 Gene family
Zm00001d048409 GRMZM2G063060 31.2 cell.division ATPase, AAA-type, CDC48 protein 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005635 nuclear envelope IDA Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005737 cytoplasm IDA Arabidopsis.org
CC GO:0005794 Golgi apparatus IDA Arabidopsis.org
CC GO:0005819 spindle IDA Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
BP GO:0006486 protein glycosylation RCA Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
CC GO:0009524 phragmoplast IDA Arabidopsis.org
BP GO:0009846 pollen germination IMP Arabidopsis.org
BP GO:0009860 pollen tube growth IMP Arabidopsis.org
BP GO:0016310 phosphorylation IDA Arabidopsis.org
BP GO:0016310 phosphorylation RCA Arabidopsis.org
MF GO:0016887 ATPase activity ISS Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
BP GO:0042742 defense response to bacterium RCA Arabidopsis.org
MF GO:0042802 identical protein binding IPI Arabidopsis.org
BP GO:0046686 response to cadmium ion IEP Arabidopsis.org
BP GO:0046686 response to cadmium ion RCA Arabidopsis.org
CC GO:0048046 apoplast IDA Arabidopsis.org
BP GO:0051301 cell division IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 131 194
IPR003959 ATPase_AAA_core 244 373
IPR003959 ATPase_AAA_core 517 651
IPR003338 CDC4_N-term_subdom 29 110
No external refs found!