AT3G08820


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G08820
Cluster HCCA cluster: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
GSVIVT01007645001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
GSVIVT01008173001 No alias No description available 0.02 Gene family
GSVIVT01010031001 No alias No description available 0.02 Gene family
GSVIVT01017880001 No alias No description available 0.06 Gene family
GSVIVT01020758001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01021023001 No alias No description available 0.02 Gene family
GSVIVT01021756001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01024912001 No alias No description available 0.06 Gene family
GSVIVT01028819001 No alias No description available 0.04 Gene family
GSVIVT01029382001 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.05 Gene family
GSVIVT01032994001 No alias No description available 0.05 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
GSVIVT01033837001 No alias No description available 0.03 Gene family
GSVIVT01036169001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01036511001 No alias No description available 0.03 Gene family
GSVIVT01037258001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01037377001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01037562001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os01g15530 Os01g0260000 No description available 0.04 Gene family
LOC_Os02g18810 Os02g0290000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os03g60690 Os03g0821700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os05g33920 Os05g0409800 No description available 0.02 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os08g25280 Os08g0340900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os08g33700 Os08g0434000 No description available 0.03 Gene family
MA_10164206g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_10429540g0020 No alias No description available 0.06 Gene family
MA_122899g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_20599g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_210823g0010 No alias No description available 0.05 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_30949g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_3317g0020 No alias No description available 0.03 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_3449g0010 No alias No description available 0.02 Gene family
MA_36655g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_483636g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_5481g0010 No alias No description available 0.1 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_61422g0020 No alias No description available 0.03 Gene family
MA_63139g0020 No alias No description available 0.05 Gene family
MA_65500g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_86894g0010 No alias No description available 0.02 Gene family
MA_9258g0010 No alias No description available 0.05 Gene family
MA_961981g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_97789g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo420323 PACid_15412079 No description available 0.02 Gene family
Solyc01g010510.3.1 Solyc01g010510.3 No description available 0.03 Gene family
Solyc01g100800.2.1 Solyc01g100800.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g011680.3.1 Solyc02g011680.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family
Solyc02g079260.2.1 Solyc02g079260.2 No description available 0.02 Gene family
Solyc02g093380.1.1 Solyc02g093380.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc03g007840.1.1 Solyc03g007840.1 35.1.27 not assigned.no ontology.tetratricopeptide... 0.05 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.03 Gene family
Solyc03g098420.3.1 Solyc03g098420.3 No description available 0.03 Gene family
Solyc03g116843.1.1 Solyc03g116843.1 No description available 0.12 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.05 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc05g012630.1.1 Solyc05g012630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc06g062610.2.1 Solyc06g062610.2 No description available 0.03 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.05 Gene family
Solyc08g023640.1.1 Solyc08g023640.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc09g009950.3.1 Solyc09g009950.3 No description available 0.02 Gene family
Solyc09g059580.2.1 Solyc09g059580.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc11g008970.1.1 Solyc11g008970.1 No description available 0.02 Gene family
Solyc11g010220.2.1 Solyc11g010220.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g071370.1.1 Solyc11g071370.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc12g006575.1.1 Solyc12g006575.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.02 Gene family
Zm00001d003050 GRMZM2G331779 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d005149 GRMZM2G138303 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.03 Gene family
Zm00001d017518 GRMZM2G014977 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d025870 GRMZM5G827485 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d037891 No alias No description available 0.03 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d042067 GRMZM2G099875 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d043107 GRMZM2G456114 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.09 Gene family
Zm00001d044547 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.02 Gene family
Zm00001d052794 GRMZM2G140600 No description available 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005575 cellular_component ND Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 176 213
IPR002885 Pentatricopeptide_repeat 276 324
IPR032867 DYW_dom 551 674
IPR002885 Pentatricopeptide_repeat 452 477
IPR002885 Pentatricopeptide_repeat 524 546
IPR002885 Pentatricopeptide_repeat 78 107
IPR002885 Pentatricopeptide_repeat 149 175
IPR002885 Pentatricopeptide_repeat 380 410
IPR002885 Pentatricopeptide_repeat 351 379
No external refs found!