AMTR_s00001p00244240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.288

Description : Endochitinase B OS=Nicotiana tabacum


Gene families : OG_01_0000104 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000104_tree ,
OG_02_0000335 (LandPlants) Phylogenetic Tree(s): OG_02_0000335_tree ,
OG_03_0002471 (SeedPlants) Phylogenetic Tree(s): OG_03_0002471_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00244240
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00243300 evm_27.TU.AmTr_v1... Endochitinase A2 OS=Pisum sativum 0.03 Archaeplastida
AMTR_s00001p00243570 evm_27.TU.AmTr_v1... Basic 30 kDa endochitinase OS=Solanum lycopersicum 0.02 Archaeplastida
AMTR_s00001p00243680 evm_27.TU.AmTr_v1... Chitinase 3 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00001p00243780 evm_27.TU.AmTr_v1... Endochitinase A2 OS=Pisum sativum 0.02 Archaeplastida
AMTR_s00066p00199730 evm_27.TU.AmTr_v1... Endochitinase EP3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G43590 No alias Chitinase family protein 0.04 Archaeplastida
AT3G16920 CTL2, ATCTL2 chitinase-like protein 2 0.02 Archaeplastida
GSVIVT01038108001 No alias Endochitinase EP3 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os01g18400.1 No alias Chitinase 10 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os05g33140.1 No alias Chitinase 9 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_295712g0010 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_80085g0010 No alias Basic endochitinase C OS=Secale cereale... 0.03 Archaeplastida
MA_8960362g0010 No alias Endochitinase 1 OS=Theobroma cacao (sp|q41596|chi1_thecc : 81.6) 0.04 Archaeplastida
Solyc02g082960.3.1 No alias Basic endochitinase (Fragment) OS=Solanum lycopersicum... 0.04 Archaeplastida
Solyc10g055800.2.1 No alias Basic 30 kDa endochitinase OS=Solanum lycopersicum... 0.03 Archaeplastida
Zm00001e002252_P001 No alias Chitinase 8 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
AMTR_s00001p00243300 evm_27.TU.AmTr_v1... Endochitinase A2 OS=Pisum sativum 0.02 LandPlants
AMTR_s00001p00243570 evm_27.TU.AmTr_v1... Basic 30 kDa endochitinase OS=Solanum lycopersicum 0.02 LandPlants
AMTR_s00001p00243780 evm_27.TU.AmTr_v1... Endochitinase A2 OS=Pisum sativum 0.02 LandPlants
AT1G02360 No alias Chitinase family protein 0.02 LandPlants
LOC_Os05g33140.1 No alias Chitinase 9 OS=Oryza sativa subsp. japonica... 0.02 LandPlants
LOC_Os05g33150.1 No alias Chitinase 7 OS=Oryza sativa subsp. japonica... 0.01 LandPlants
MA_10425967g0010 No alias Basic endochitinase OS=Vitis vinifera... 0.01 LandPlants
MA_80085g0010 No alias Basic endochitinase C OS=Secale cereale... 0.03 LandPlants
Smo428512 No alias No description available 0.01 LandPlants
Solyc02g082930.3.1 No alias Acidic 27 kDa endochitinase OS=Solanum lycopersicum... 0.02 LandPlants
Solyc02g082960.3.1 No alias Basic endochitinase (Fragment) OS=Solanum lycopersicum... 0.04 LandPlants
Solyc10g055800.2.1 No alias Basic 30 kDa endochitinase OS=Solanum lycopersicum... 0.03 LandPlants
Zm00001e030152_P001 No alias Basic endochitinase A OS=Secale cereale... 0.01 LandPlants
Zm00001e030152_P001 No alias Basic endochitinase A OS=Secale cereale... 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
MF GO:0008061 chitin binding IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001002 Chitin-bd_1 59 98
IPR000726 Glyco_hydro_19_cat 108 191
No external refs found!