AT3G05240 (MEF19)


Aliases : MEF19

Description : mitochondrial editing factor 19


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G05240
Cluster HCCA cluster: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01000086001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01003422001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01011735001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01015087001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01016860001 No alias No description available 0.07 Gene family
GSVIVT01020758001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01022230001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01023971001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01024493001 No alias No description available 0.04 Gene family
GSVIVT01024588001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01024870001 No alias No description available 0.03 Gene family
GSVIVT01025639001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01026025001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
GSVIVT01031265001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01031266001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01032394001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01032994001 No alias No description available 0.04 Gene family
GSVIVT01033004001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033837001 No alias No description available 0.03 Gene family
GSVIVT01035837001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g01115 Os01g0101150 No description available 0.03 Gene family
LOC_Os01g19380 Os01g0299150,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os01g59890 Os01g0814300 35.2 not assigned.unknown Tetratricopeptide repeat... 0.09 Gene family
LOC_Os02g44480 Os02g0663900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os03g11700 Os03g0216400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os04g35650 Os04g0436800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g41120 Os04g0488200 No description available 0.04 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.06 Gene family
LOC_Os05g05490 Os05g0147600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
LOC_Os05g30710 Os05g0370000 No description available 0.03 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family
LOC_Os08g38610 Os08g0494200,... No description available 0.05 Gene family
LOC_Os08g40020 Os08g0511000 No description available 0.03 Gene family
LOC_Os09g38310 Os09g0555400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.08 Gene family
LOC_Os12g06650 Os12g0163600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_10432670g0020 No alias No description available 0.05 Gene family
MA_185098g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20746g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_525914g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_9258g0010 No alias No description available 0.03 Gene family
MA_9360929g0010 No alias No description available 0.04 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.04 Gene family
Solyc01g095690.2.1 Solyc01g095690.2 No description available 0.03 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc03g007840.1.1 Solyc03g007840.1 35.1.27 not assigned.no ontology.tetratricopeptide... 0.04 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.02 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.03 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.04 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc06g062610.2.1 Solyc06g062610.2 No description available 0.03 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.04 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc08g078570.2.1 Solyc08g078570.2 No description available 0.04 Gene family
Solyc09g009950.3.1 Solyc09g009950.3 No description available 0.04 Gene family
Solyc09g059580.2.1 Solyc09g059580.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc11g007230.1.1 Solyc11g007230.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g010220.2.1 Solyc11g010220.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc12g096510.2.1 Solyc12g096510.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.03 Gene family
Zm00001d012961 GRMZM2G144071 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d013136 GRMZM5G892151 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d044547 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d049122 GRMZM2G333678 No description available 0.05 Gene family

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0080156 mitochondrial mRNA modification IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 357 381
IPR002885 Pentatricopeptide_repeat 420 447
IPR002885 Pentatricopeptide_repeat 457 482
IPR002885 Pentatricopeptide_repeat 255 280
IPR002885 Pentatricopeptide_repeat 385 413
IPR002885 Pentatricopeptide_repeat 172 208
IPR002885 Pentatricopeptide_repeat 282 326
IPR002885 Pentatricopeptide_repeat 70 117
No external refs found!