AT3G03300 (ATDCL2, DCL2)


Aliases : ATDCL2, DCL2

Description : dicer-like 2


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G03300
Cluster HCCA cluster: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.32 No alias No description available 0.02 Gene family
Cpa|evm.model.tig00000741.30 No alias No description available 0.01 Gene family
Cpa|evm.model.tig00000741.31 No alias No description available 0.01 Gene family
Cre07.g345900 No alias No description available 0.02 Gene family
GSVIVT01001045001 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.03 Gene family
GSVIVT01027460001 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
GSVIVT01035494001 No alias No description available 0.02 Gene family
MA_10429678g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a... 0.01 Gene family
MA_10436812g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.01 Gene family
MA_10437243g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.06 Gene family
MA_10437243g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.05 Gene family
Smo444049 PACid_15413649 27.1.20 RNA.processing.degradation dicer Encodes an... 0.05 Gene family
Smo448444 PACid_15405962 27.1.20 RNA.processing.degradation dicer Encodes a... 0.02 Gene family
Smo74321 PACid_15409014 27.1.20 RNA.processing.degradation dicer Encodes an... 0.03 Gene family
Smo86110 PACid_15420555 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Solyc07g005030.3.1 Solyc07g005030.3 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Solyc08g067210.3.1 Solyc08g067210.3 No description available 0.03 Gene family
Solyc10g005130.3.1 Solyc10g005130.3 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
Solyc10g006210.2.1 Solyc10g006210.2 No description available 0.02 Gene family
Zm00001d025830 GRMZM2G024466,... 27.1.20 RNA.processing.degradation dicer Encodes an... 0.03 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.09 Gene family

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Arabidopsis.org
MF GO:0004525 ribonuclease III activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0006342 chromatin silencing RCA Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0007267 cell-cell signaling RCA Arabidopsis.org
MF GO:0008026 ATP-dependent helicase activity ISS Arabidopsis.org
BP GO:0009616 virus induced gene silencing RCA Arabidopsis.org
BP GO:0009855 determination of bilateral symmetry RCA Arabidopsis.org
BP GO:0010014 meristem initiation RCA Arabidopsis.org
BP GO:0010050 vegetative phase change RCA Arabidopsis.org
BP GO:0010073 meristem maintenance RCA Arabidopsis.org
BP GO:0010216 maintenance of DNA methylation IMP Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference IMP Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Arabidopsis.org
BP GO:0016569 covalent chromatin modification RCA Arabidopsis.org
BP GO:0030422 production of siRNA involved in RNA interference RCA Arabidopsis.org
BP GO:0031047 gene silencing by RNA RCA Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Arabidopsis.org
BP GO:0043687 post-translational protein modification RCA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0051607 defense response to virus IMP Arabidopsis.org
BP GO:0051607 defense response to virus RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 378 490
IPR011545 DEAD/DEAH_box_helicase_dom 26 191
IPR005034 Dicer_dimerisation_dom 559 638
IPR000999 RNase_III_dom 995 1113
IPR000999 RNase_III_dom 1185 1296
IPR003100 PAZ_dom 816 957
No external refs found!