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  5. Nbi_g19709

Nbi_g19709


Description : protein involved in PS-I assembly *(PPD1) & original description: none


Gene families : OG0006534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g19709

Target Alias Description ECC score Gene Family Method Actions
AT4G15510 No alias Photosystem II reaction center PsbP family protein 0.03 OrthoFinder output from all 47 species
Aev_g12134 No alias protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Cre08.g362900 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Dcu_g37634 No alias protein involved in PS-I assembly *(PPD1) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os07g17390.1 LOC_Os07g17390 PPD1 protein involved in PS-I assembly 0.02 OrthoFinder output from all 47 species
LOC_Os12g37710.1 LOC_Os12g37710 PPD1 protein involved in PS-I assembly 0.06 OrthoFinder output from all 47 species
Lfl_g08661 No alias protein involved in PS-I assembly *(PPD1) & original... 0.04 OrthoFinder output from all 47 species
MA_81231g0010 No alias PPD1 protein involved in PS-I assembly 0.03 OrthoFinder output from all 47 species
Mp1g27590.1 No alias PPD1 protein involved in PS-I assembly 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001177 No alias protein involved in PS-I assembly *(PPD1) & original... 0.06 OrthoFinder output from all 47 species
Solyc01g106090.3.1 Solyc01g106090 PPD1 protein involved in PS-I assembly 0.03 OrthoFinder output from all 47 species
Spa_g12584 No alias protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Tin_g00363 No alias protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e002887_P002 Zm00001e002887 PPD1 protein involved in PS-I assembly 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 100 276
No external refs found!